Section: New Software and Platforms

WhatsHap and pWhatsHap

Functional Description

WhatsHap is a DP approach for haplotype assembly from long reads that works until 20x coverage, solves the minimum error correction problem exactly. pWhatsHap is a parallelisation of the core dynamic programming algorithm of WhatsHap done by M. Aldinucci, A. Bracciali, T. Marschall, M. Patterson, N. Pisanti, and M. Torquati.

• Participants: Gunnar Klau, Tobias Marschall, Murray Patterson, Nadia Pisanti, Alexander Schönhuth, Leen Stougie, Leo van Iersel

• Contact: Alexander Schönhuth (not Inria), Gunnar Klau, Nadia Pisanti

• URL: https://bitbucket.org/whatshap/whatshap and https://bitbucket.org/whatshap/whatshap/branch/parallel